PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G141200.4
Common NameB456_009G141200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 537aa    MW: 59450 Da    PI: 9.1278
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G141200.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05148170123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Gorai.009G141200.4 148 FVCEICNKGFQRDQNLQLHRRGH 170
                         89*******************88 PP

2zf-C2H212.60.0004224246123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Gorai.009G141200.4 224 WKCEKCSKKYAVQSDWKAHSKTC 246
                         58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-5147170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.32E-7147170No hitNo description
SMARTSM003550.017148170IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949148170IPR007087Zinc finger, C2H2
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
SMARTSM0035567189219IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4212245IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.32E-7219244No hitNo description
SMARTSM00355140224244IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MMKSFMFHQQ QQQQQQQQQV LEENMSNLTS ASASGEASIS SGNRTEAGSN YPQQYFTTSQ  60
QPQTQPVKRK RNLPGNPGLV WVQKALYLNT ILFCYLFCSF PFLLSLSLSG TQFLMHFLGG  120
FFIFYFESDP DAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT  180
NKEVRKKVYV CPETNCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK  240
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAVESA RAINPLLSPH QPGTAAASHM  300
NLQVPQFNPH DIKLQAFSLK KEQQSFTPLR PEIPPWLASQ PMLGAGPGPP HPIDLSSPSS  360
SIFSPRLDHQ DLTLHGTPSA NPSLVPTLPP YHHTALPSPH MSATALLQKA AHMGATMSRK  420
SGSSSVPSTV AAAASASLMR PHQQTHVSPD SAGTNNNTTT AGFGLDLPSR EELDVGSSSG  480
IIHGLAPFGN RKPAANAGDD DDDNNNIAGS EAMWQFHQRI LLENNYTNST HDDKRH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174186KLKQRTNKEVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5271321e-171HQ527132.1 Gossypium herbaceum clone NBRI_D2_310 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442745.10.0PREDICTED: protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-115IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A0D2TJN00.0A0A0D2TJN0_G
STRINGVIT_09s0002g02300.t011e-158(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.16e-94indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]